CDS

Accession Number TCMCG042C46978
gbkey CDS
Protein Id XP_016479114.1
Location complement(join(75530..75582,75690..75799,75889..76022,76198..76260,76618..76768,77964..78016,78111..78236,78789..79113,79187..79356,89998..90199,90393..90601,92081..92290,92391..92520,94297..94411,94956..95083,97047..97139,97327..97538,97618..97725,97806..97910,99138..99308,99395..99573,99788..100016,101037..101151,102424..102599,103438..103605,103834..103920,105174..105296))
Gene LOC107800461
GeneID 107800461
Organism Nicotiana tabacum

Protein

Length 1314aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA319578
db_source XM_016623628.1
Definition PREDICTED: DNA repair protein RAD50 [Nicotiana tabacum]

EGGNOG-MAPPER Annotation

COG_category L
Description DNA repair protein
KEGG_TC -
KEGG_Module M00291        [VIEW IN KEGG]
M00292        [VIEW IN KEGG]
M00295        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03032        [VIEW IN KEGG]
ko03400        [VIEW IN KEGG]
KEGG_ko ko:K10866        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03440        [VIEW IN KEGG]
ko03450        [VIEW IN KEGG]
ko04218        [VIEW IN KEGG]
map03440        [VIEW IN KEGG]
map03450        [VIEW IN KEGG]
map04218        [VIEW IN KEGG]
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0000228        [VIEW IN EMBL-EBI]
GO:0000280        [VIEW IN EMBL-EBI]
GO:0000722        [VIEW IN EMBL-EBI]
GO:0000723        [VIEW IN EMBL-EBI]
GO:0000724        [VIEW IN EMBL-EBI]
GO:0000725        [VIEW IN EMBL-EBI]
GO:0000781        [VIEW IN EMBL-EBI]
GO:0000784        [VIEW IN EMBL-EBI]
GO:0000785        [VIEW IN EMBL-EBI]
GO:0000790        [VIEW IN EMBL-EBI]
GO:0000793        [VIEW IN EMBL-EBI]
GO:0000794        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003677        [VIEW IN EMBL-EBI]
GO:0003690        [VIEW IN EMBL-EBI]
GO:0003691        [VIEW IN EMBL-EBI]
GO:0003697        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004017        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005694        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006278        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006302        [VIEW IN EMBL-EBI]
GO:0006310        [VIEW IN EMBL-EBI]
GO:0006312        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006753        [VIEW IN EMBL-EBI]
GO:0006793        [VIEW IN EMBL-EBI]
GO:0006796        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0007004        [VIEW IN EMBL-EBI]
GO:0007049        [VIEW IN EMBL-EBI]
GO:0007127        [VIEW IN EMBL-EBI]
GO:0007131        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009059        [VIEW IN EMBL-EBI]
GO:0009117        [VIEW IN EMBL-EBI]
GO:0009123        [VIEW IN EMBL-EBI]
GO:0009165        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010833        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016233        [VIEW IN EMBL-EBI]
GO:0016301        [VIEW IN EMBL-EBI]
GO:0016310        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0016772        [VIEW IN EMBL-EBI]
GO:0016776        [VIEW IN EMBL-EBI]
GO:0018130        [VIEW IN EMBL-EBI]
GO:0019205        [VIEW IN EMBL-EBI]
GO:0019438        [VIEW IN EMBL-EBI]
GO:0019637        [VIEW IN EMBL-EBI]
GO:0022402        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0030870        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032200        [VIEW IN EMBL-EBI]
GO:0032392        [VIEW IN EMBL-EBI]
GO:0032508        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034645        [VIEW IN EMBL-EBI]
GO:0034654        [VIEW IN EMBL-EBI]
GO:0035825        [VIEW IN EMBL-EBI]
GO:0035861        [VIEW IN EMBL-EBI]
GO:0042162        [VIEW IN EMBL-EBI]
GO:0042592        [VIEW IN EMBL-EBI]
GO:0043047        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043565        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044271        [VIEW IN EMBL-EBI]
GO:0044281        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044427        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044454        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0046940        [VIEW IN EMBL-EBI]
GO:0048285        [VIEW IN EMBL-EBI]
GO:0050145        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0051321        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0051880        [VIEW IN EMBL-EBI]
GO:0055086        [VIEW IN EMBL-EBI]
GO:0060249        [VIEW IN EMBL-EBI]
GO:0061982        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0065008        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070192        [VIEW IN EMBL-EBI]
GO:0071103        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0071897        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:0090407        [VIEW IN EMBL-EBI]
GO:0090734        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0098687        [VIEW IN EMBL-EBI]
GO:0098847        [VIEW IN EMBL-EBI]
GO:0140013        [VIEW IN EMBL-EBI]
GO:1901293        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901362        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:1903046        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGAGCACTGTAGATAAAATGCTTATAAAAGGCATACGGAGCTTTGACCCCGAGAACAAAAACGTCATCACTTTTTTCAGGCCATTAACGCTCATCGTCGGCCCTAATGGCGCTGGAAAAACCACTATAATTGAGTGCTTGAAGGTTGCCTGCACTGGTGAGATGCCACCAAATGCTCGCTCCGGTCATAGCTTCATCCATGACCCTAAGGTGGCTGGAGAGACAGAGACAAAGGGGCAGATAAAGCTGCGGTTCAAGACAGCAGCAGGGAAAGATGTGGTGTGCATTAGGTCTTTTCAGCTAACTCAAAAGGCAACAAAGATGGAGTACAAGGCCATTGAGAGTGTACTACAGACTATCAATCCTCACACTGGAGAGAAAGTTTGCCTAAGCTATAGATGTGCCGATATGGACCGAGAAATCCCTGCTCTCATGGGTGTCTCAAAGGCCATTCTTGAAAATGTGATTTTTGTTCACCAAGATGAGGCAAACTGGCCATTGCAAGATCCTTCTACACTGAAAAAGAAGTTTGATGATATTTTCTCCGCTACTAGGTACACAAAGGCGTTGGAAGTTATTAAAAAGCTTCACAAGGATCAAGCTCAAGAAATAAAGACATATAAGTTGAAACTGGAGAATCTTCAGACATTGAAAGATGCTGCTTACAAGTTGCGGGAAAGCATCGCCCAAGATAAAGAGAAAACAGAGTCACTGAAAAGTCAGATGGAGGAGCTTGAAAAAGAGATTCAGACTCTAGAGAGTAAGATCCACCATGCTGAAGCAACTTTAAAGGACCTTCATCAATTGCAGCGAGAGATAGCCACCAAAACTGCTGAAAGGAAAACATTGTTCAAGGAACAGGAAAAACAGTATGCTGCACTTACAGAGGAGAATGAAGACACTGATGAAGAGCTGAGTGAATGGAAAACAAAGTTTGATGAAAGGATAGCGCTTCTGGAATCGAAAATTAGCAAATTGGAGAGGGAAATGAATGACTCAGAGACAAAGAGTTCCCTTCTTAAGCAGTCCATAACAGACTATATCGTGGAGATCAGCAAGCTTCAAGCTGAGGCTGAAGCTCTTGCGGTGTTAAAGAATGAAAGAGACGTCACTATCAGGAAGCTTTTTGACAGACATAACTTAGGTGCTGTTCCAAGTGGGCCGCTCAGTGATGATGTCGCATTGAATTTAATGAATCGTATAAAACTACGATTAGCACATCTTGATAAGGATTTACAAGATAAAAAGGAATCAAATGAGGCAGAAATTGCAGCTGCGTGGAATCAATACGAAATTGCAAATAACCTCTGGAATGAAAAGGAGGCGCAAAAACTGGCTAGAGCAGATATTAAGAATGGCATTTTGAAGCGTATTGAAGAGAAGGAGAATGAGCGTAATGAGTTTGAACGTGAGATTTCTAATGTTAATATGGCTCATCTTGATGAGAGAGAGAAGAAAATGCAAATTGAATGCGAGAGAAAGTCTAAGCAGCTTGCAGAAAGAGAATTTGACTCAAACATAAGGCAAAAGCAGACTGAGATGTTCACCATAGACCAAAAACTTAAAGATCTTCATGCTGAAAAAGATCGTATGGCCAATGAGTCTGAGGATAGAATTAAGCTCTCTCTTAAGAAGGCAGAGCTGGAAACTCTCAAGAAGAAACATAAAAAGCTAATGGATGATAACAAGGATACGGTAAAAGGAGTATTGAAAGGAAGGCTTCCATCTGACAAGGACTTGAAGAAAGAAATTACTCAGGCACAAAGGGCGCTCCAGAGAGAGTTTGATGACTTGAGTGCCAAAGCCCGCGAAGCCGAGAAGGAGGTCAATATGTCGCAGATGAAAATAGAAGAAGTTAAGCATAACTTGTCCAAATATCACAAGGACATGGACTCAAGAAGGAGATTTCTGGAATCAAAGCTCCAGTTGCTGGCCCAGGAATTTGCTGGTGTAGAGTCCTATCCCAAAATTATGGACTCAGCCAAAGAAAAAAGGGATGTCCAAAAAAGCAAGTACAACATTGCCGATGGTATGCGGCAAATGTTTGATCCATTTGAAAGAGTTGCTCGTGCTCATCACATTTGCCCTTGCTGTGAGCGTCCGTTCTCTGCTGAAGAGGAGGATGAATTTGTTAAGAAGCAACGAGTGAAAGCTGCTAGCTCTGCTGAACATATTAAAGTATTAGCTATGGATTCTTCAAATGCTGATTCTCGTTTCCAACAGTTAGACAAGCTTCGTTTGGTTTATGAAGAGTATCTCAAAGTTGGAAAGGAATCAATTCCTCTAGCAGAGAAGAACCTGAATGAGCTAAATGAAGAATTAGATCACAAAAATCAGGCTCTTGATGATGTTTTAGGTGTCTTGGCTCAGATAAAGGCTGAGAAGGATGCAGTTGATGCGCTAATACAACCTGTAGAAACATCTGACAGGCTTTTCCAAGAAATTCAAACTCTGCAGAAGCAAGTCGATGATTTGGATTATGGTCTTGATATCCGTGGGCAAGGCATAAGATCTATGGAGGAAATTCAATCGGAATTGGATGAACTGCAGAGCAAAAGGGAAAATTTGTCTTCGGAAGTGGAGAAACTGAAAGATGATCGGAGGTACATGGAAAATGAGTTTTCAAGTTTCCAATTAAGATGGTTTACTGTAAGGGAAGAGAAGACGCAAGCAGCAAACAAATTGAACAATGTTAAAAGGGCAGAAGAGGAATTGGATGACTTGGTGGAGCAGAAAAATAAAGTTGAGCTTGAAGAGAAGCATCTTGCAGAGGCTGTTGGTCCCTTGTCGAAGGAAAAGGACAAGCACTTTAGGGACTACCAAAATCTGAAAACAAAACTTAGCAAGGAGTTGGAAGAGCAGGCAGAAATTAGAAGACATTATCAACAAGATGTAGATGAACTTAAGAAGATTACCTCCAAAATTAGAGAGTATTATGAGTTAAAGAAAGAACAAAAATTGAATGAACTGCAGGACAAGCGAAGCCTGTCAGAATCTCAGCTTCAAAATTGTGAGTCCAGAAAGCAAGAGATTTCGGCTGAAGTGGCGAAAAGTAATGCTTTAATGCAGAACCAGGACAGTTTGAGACGCAACATTGAGGATAACTTGAACTATAGGAAAACTAAGGCTGAAGTTGATAAGCTCACCCGTGAGATTGAATTACTGGAAGATAAAGTGCTGAAGATGGGTGGCCTCTCCACTATTGAGGCTGAGCTTAAAAAGCTTTCACATGAAAGAGAGAAGCTACTTTCTGAGTTAAACAAGTGCCATGGTACCCTATCTGTTTATCAAAGCAGCATTTCCAAGAACAAAGTTGATCTTAAGCAGGCACAGTACAAGGATATTGACAAACGCTATTTTGATCAGTTAATCCAGCTGAAGACTACGGAGATGGCAAACAAGGATCTGGACAGATATTACAGTGCCCTTGACAAAGCACTGATGCGCTTCCATACAATGAAAATGGAAGAGATCAATAAGATTATCAGGGAACTGTGGCAGCAGACTTACAGGGGCCAGGACATAGATTACATAAGCATTCATTCAGATTCCGAAGGTTCTGGTACTCGATCCTACAGCTATAGGGTTTTGATGCAAACTGGTGATACTGAGCTAGAGATGCGAGGGAGGTGTAGCGCTGGCCAAAAGGTCCTTGCATCACTTATTATAAGATTGGCATTGGCTGAAACGTTTTGTCTCAACTGCGGAATTCTCGCACTGGATGAACCAACCACAAACCTAGATGGCCCCAACAGTGAGAGTCTTGCAGCAGCTCTCTTAAGAATTATGGAGGACAGGAAAGGTCAAGAAAACTTCCAATTAATTGTCATTACACATGACGAGCGCTTTGCTCAATATATTGGCCAGCGCCAGCATGCAGAAAAGTATTATCGGGTTTCAGTCTCCGGCAGTGATTATTCGGTAGACGCTTCATGCTTGACTTAG
Protein:  
MSTVDKMLIKGIRSFDPENKNVITFFRPLTLIVGPNGAGKTTIIECLKVACTGEMPPNARSGHSFIHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKATKMEYKAIESVLQTINPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYKLRESIAQDKEKTESLKSQMEELEKEIQTLESKIHHAEATLKDLHQLQREIATKTAERKTLFKEQEKQYAALTEENEDTDEELSEWKTKFDERIALLESKISKLEREMNDSETKSSLLKQSITDYIVEISKLQAEAEALAVLKNERDVTIRKLFDRHNLGAVPSGPLSDDVALNLMNRIKLRLAHLDKDLQDKKESNEAEIAAAWNQYEIANNLWNEKEAQKLARADIKNGILKRIEEKENERNEFEREISNVNMAHLDEREKKMQIECERKSKQLAEREFDSNIRQKQTEMFTIDQKLKDLHAEKDRMANESEDRIKLSLKKAELETLKKKHKKLMDDNKDTVKGVLKGRLPSDKDLKKEITQAQRALQREFDDLSAKAREAEKEVNMSQMKIEEVKHNLSKYHKDMDSRRRFLESKLQLLAQEFAGVESYPKIMDSAKEKRDVQKSKYNIADGMRQMFDPFERVARAHHICPCCERPFSAEEEDEFVKKQRVKAASSAEHIKVLAMDSSNADSRFQQLDKLRLVYEEYLKVGKESIPLAEKNLNELNEELDHKNQALDDVLGVLAQIKAEKDAVDALIQPVETSDRLFQEIQTLQKQVDDLDYGLDIRGQGIRSMEEIQSELDELQSKRENLSSEVEKLKDDRRYMENEFSSFQLRWFTVREEKTQAANKLNNVKRAEEELDDLVEQKNKVELEEKHLAEAVGPLSKEKDKHFRDYQNLKTKLSKELEEQAEIRRHYQQDVDELKKITSKIREYYELKKEQKLNELQDKRSLSESQLQNCESRKQEISAEVAKSNALMQNQDSLRRNIEDNLNYRKTKAEVDKLTREIELLEDKVLKMGGLSTIEAELKKLSHEREKLLSELNKCHGTLSVYQSSISKNKVDLKQAQYKDIDKRYFDQLIQLKTTEMANKDLDRYYSALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYISIHSDSEGSGTRSYSYRVLMQTGDTELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNSESLAAALLRIMEDRKGQENFQLIVITHDERFAQYIGQRQHAEKYYRVSVSGSDYSVDASCLT